- can be
inferred from the
functions of
proteins with
similar sequences.
HHsearch and
HHblits are two main
programs in the
package and the
entry point to...
-
Templates can be
found using sequence alignment methods (e.g.
BLAST or
HHsearch) or
protein threading methods,
which are
better in
finding distantly related...
- grouping, with the last
level mostly defined by Pfam and
supplemented by
HHsearch clustering for
uncategorized sequences. ECOD has the best PDB coverage...
- M,
Edstam MM,
Fredriksson R, Schiöth HB (September 2011). "Independent
HHsearch, Needleman--Wunsch-based, and
motif analyses reveal the
overall hierarchy...
-
develop a
database of
predicted proteins in the
yeast species S. cerevisiae.
HHsearch is a
software package for the
detection of
remotely related protein sequences...
- M,
Edstam MM,
Fredriksson R, Schiöth HB (September 2011). "Independent
HHsearch, Needleman—Wunsch-based, and
motif analyses reveal the
overall hierarchy...
-
Richard James Boys
Conditional random field Estimation theory HHpred /
HHsearch free
server and
software for
protein sequence searching HMMER, a free hidden...
-
applied to both problems.
HHpred is a po****r
threading server which runs
HHsearch, a
widely used
software for
remote homology detection based on pairwise...
- M,
Edstam MM,
Fredriksson R, Schiöth HB (September 2011). "Independent
HHsearch, Needleman—Wunsch-based, and
motif analyses reveal the
overall hierarchy...
- M,
Edstam MM,
Fredriksson R, Schiöth HB (September 2011). "Independent
HHsearch, Needleman--Wunsch-based, and
motif analyses reveal the
overall hierarchy...
