-
UPGMA (unweighted pair
group method with
arithmetic mean) is a
simple agglomerative (bottom-up)
hierarchical clustering method. It also has a weighted...
- The
guide tree in the
initial versions of
Clustal was
constructed via a
UPGMA cluster analysis of the
pairwise alignments,
hence the name CLUSTAL.cf....
- taxa ( a {\displaystyle a} to e {\displaystyle e} ) have been
clustered by
UPGMA based on a
matrix of
genetic distances. The
hierarchical clustering dendrogram...
-
constant rate of
evolution (i.e., a
molecular clock)
across lineages. The
UPGMA (Unweighted Pair
Group Method with
Arithmetic mean) and
WPGMA (Weighted...
- tree-building
methods include unweighted pair
group method using arithmetic mean (
UPGMA) and
Neighbor joining,
which are distance-based methods,
Maximum parsimony...
-
schemes include complete linkage clustering,
average linkage clustering (
UPGMA and WPGMA), and Ward's method. In the
naive algorithm for agglomerative...
- neighbor-joining,
maximum parsimony (also
simply referred to as parsimony),
UPGMA,
Bayesian phylogenetic inference,
maximum likelihood and
distance matrix...
-
phylogenetics methods. Distance-matrix
methods such as neighbor-joining or
UPGMA,
which calculate genetic distance from
multiple sequence alignments, are...
- and Michener. The
WPGMA method is
similar to its
unweighted variant, the
UPGMA method. The
WPGMA algorithm constructs a
rooted tree (dendrogram) that reflects...
-
based methods for
phylogeny reconstruction:
Additive tree
reconstruction UPGMA Neighbor joining Fitch-Margoliash
Additive tree
reconstruction is based...
