- In
bioinformatics and proteomics,
ProbCons is an open
source software for
probabilistic consistency-based
multiple alignment of
amino acid sequences. It...
- non-conserved
terminal bases,
Clustal Omega can be more
accurate than
Probcons or T-Coffee,
despite the fact that both are consistency-based algorithms...
- progressive-refinement method.
Since version 5 it uses a
hidden Markov model similar to
ProbCons.
Edgar graduated in 1982 from
University College London, BSc in Physics...
-
common multiple sequence alignment packages (Muscle, ClustalW, Mafft,
ProbCons, etc.). The
resulting alignments are
slightly better than the individual...
- queries. The main
advantage of
Clustal Omega over
other MSA
tools (Muscle,
ProbCons) is its efficiency,
while maintaining a
significant accuracy of the results...
-
DECIPHER FASTA Fast
statistical alignment HMMER HH-suite
JAligner MAFFT MAVID MUSCLE Nextflow Phyloscan Probalign ProbCons Stemloc T-Coffee
UGENE Y****...
- in
helix sequence regions, 2D
molecule viewer MUSCLE, MAFFT, ClustalW,
ProbCons,
FastAligner (region-align+auto-reference) arb-parsimony & -NJ, RAxML,...
-
probabilities Protein Global Roshan and
Livesay 2006 Free,
public domain ProbCons Probabilistic/consistency
Protein Local or
global C. Do et al. 2005 Free...
- the
recalculated Z {\displaystyle Z} with
inversed base pair strings.
ProbCons Multiple Sequence Alignment U.
Roshan and D. R. Livesay, Probalign: multiple...
- Boiss. Poa
ajanensis Prob. Poa
akmanii Soreng, P.Hein & H.Scholz Poa
alberti Regel Poa
albescens Hitchc. Poa ×
alexandrae Prob. Poa
almasovii Golub Poa...
