- <name>C</name> </clade> </clade> </phylogeny> </
phyloxml> Han, Mira V.; Zmasek,
Christian M. (2009). "
phyloXML:
XML for
evolutionary biology and comparative...
- TREES; Tree tree1 = ((Alpha,Beta),Gamma,Delta); END;
Newick format Ne
XML format phyloXML Maddison DR,
Swofford DL,
Maddison WP (1997). "NEXUS: An extensible...
-
formats are
supported for
reading and writing,
including Newick,
NEXUS and
phyloXML.
Common tree mani****tions and
traversals are
supported via the Tree and...
- the
phylogenetic network software PhyloNet
makes use of both the
Extended Newick and Rich
Newick format.
phyloXML T-REX (Webserver)
allows handling phylogenetic...
- Bel M (September 2017). "PhyD3: a
phylogenetic tree
viewer with
extended phyloXML support for
functional genomics data visualization". Bioinformatics. 33...
- the
phyloXML format.
Archaeopteryx is the
successor to Java
program A Tree
Viewer (ATV). Han, Mira V.; Zmasek,
Christian M. (2009). "
phyloXML:
XML for...
-
complement MathML. OPML: an
XML format for
outlines phyloXML –
XML for
phylogenetic and
phylogenomic applications PMML –
XML for
predictive analytics and...
- can be
installed via
BEAUti out of the box. A
related project is Lingua
Phylo (LPhy). LPhy is a
probabilistic programming language for
defining phylogenetic...
- D.; Scornavacca, C.; Szöllosi, G.; Zhang, L.; Daubin, V. (2018). "Rec
PhyloXML: A
format for
reconciled gene trees". Bioinformatics. 34 (21): 3646–3652...
-
packages biojava-core, biojava-structure, biojava-structure-gui, biojava-
phylo, as well as others.
BioJava 4.2.0 was the
first release to be available...
